Dr. Federico G. Hoffmann

Walt, H. K., King, J. G., Sheele, J. M., Meyer, F. S., Pietri, J. E., Hoffmann, F. G. 2024. Do bed bugs transmit human viruses, or do humans spread bed bugs and their viruses? A worldwide survey of the bed bug RNA virosphere. Virus research 343:199349.

Pennance, T., Calvelo, J., Tennessen, J. A., Burd, R., Cayton, J., Bollmann, S. R., Blouin, M. S., Spaan, J. M., Hoffmann, F. G., Ogara, G., Rawago, F., Andiego, K., Mulonga, B., Odhiambo, M., Loker, E. S., Laidemitt, M. R., Lu, L., Iriarte, A., Odiere, M. R., Steinauer, M. L. 2024. The genome and transcriptome of the snail Biomphalaria sudanica s.l.: immune gene diversification and highly polymorphic genomic regions in an important African vector of Schistosoma mansoni. BMC genomics 25(1):192.

Pluta, A., Rola-Łuszczak, M., Hoffmann, F. G., Donnik, I., Petropavlovskiy, M., Kuźmak, J. 2024. Genetic Variability of Bovine Leukemia Virus: Evidence of Dual Infection, Recombination and Quasi-Species. Pathogens (Basel, Switzerland) 13(2).

Walt, H. K., Kooienga, E., Cammack, J. A., Tomberlin, J. K., Jordan, H. R., Meyer, F. S., Hoffmann, F. G. 2023. Bioinformatic Surveillance Leads to Discovery of Two Novel Putative Bunyaviruses Associated with Black Soldier Fly. Viruses 15(8).

Opazo, J. C., Vandewege, M. W., Hoffmann, F. G., Zavala, K., Meléndez, C., Luchsinger, C., Cavieres, V. A., Vargas-Chacoff, L., Morera, F. J., Burgos, P. V., Tapia-Rojas, C., Mardones, G. A. 2023. How many sirtuin genes are out there? evolution of sirtuin genes in vertebrates with a description of a new family member. Molecular biology and evolution

Natarajan, C., Signore, A. V., Bautista, N. M., Hoffmann, F. G., Tame, J. R., Fago, A., Storz, J. F. 2023. Evolution and molecular basis of a novel allosteric property of crocodilian hemoglobin. Current Biology 33(1):98-108.e4.

Joyce, W., Ripley, D. M., Gillis, T., Black, A. C., Shiels, H. A., Hoffmann, F. G. 2023. A Revised Perspective on the Evolution of Troponin I and Troponin T Gene Families in Vertebrates. Genome biology and evolution 15(1).

Vandewege, M. W., Patt, R. N., Merriman, D. K., Ray, D. A., Hoffmann, F. G. 2022. The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements. RNA (New York, N.Y.) 28(4):609-621.

Opazo, J. C., Hoffmann, F. G., Zavala, K., Edwards, S. V. 2022. Evolution of the DAN gene family in vertebrates. Developmental Biology 482:34-43.

Vandewege, M. W., Platt, 2nd, R. N., Merriman, D. K., Ray, D. A., Hoffmann, F. G. 2022. The PIWI/piRNA response is relaxed in a rodent that lacks mobilizing transposable elements. RNA (New York, N.Y.)

Moreno Santillán, D. D., Lama, T. M., Gutierrez Guerrero, Y. T., Brown, A. M., Donat, P., Zhao, H., Rossiter, S. J., Yohe, L. R., Potter, J. H., Teeling, E. C., Vernes, S. C., Davies KTJ, ., Myers, E., Hughes, G. M., Huang, Z., Hoffmann, F. G., Corthals, A. P., Ray, D. A., Dávalos, L. M. 2021. Large-scale genome sampling reveals unique immunity and metabolic adaptations in bats. Molecular ecology 30(23):6449-6467.

Gutierrez, J., Platt, R., Opazo, J. C., Ray, D. A., Hoffmann, F. G., Vandewege, M. 2021. Evolutionary history of the vertebrate Piwi gene family. PeerJ 9:e12451.

Hoffmann, F. G., Storz, J. F., Kuraku, S., Vandewege, M. W., Opazo, J. C. 2021. Whole-Genome Duplications and the Diversification of the Globin-X Genes of Vertebrates. Genome biology and evolution 13(10).

Vines, P. L., Hoffmann, F. G., Meyer, F. S., Allen, T. W., Tomaso-Peterson, M. 2021. Gaeumannomyces nanograminis, sp. nov., a hyphopodiate fungus identified from diseased roots of ultradwarf bermudagrass in the United States. Mycologia 113(5):938-948.

Signore, A. V., Tift, M. S., Hoffmann, F. G., Schmitt, T. L., Moriyama, H., Storz, J. F. 2021. Evolved increases in hemoglobin-oxygen affinity and the Bohr effect coincided with the aquatic specialization of penguins. Proceedings of the National Academy of Sciences of the United States of America 118(13).

Preza, M., Calvelo, J., Langleib, M., Hoffmann, F. G., Castillo, E., Koziol, U., Iriarte, A. 2021. Stage-specific transcriptomic analysis of the model cestode Hymenolepis microstoma. Genomics 113(2):620-632.

Fenner, J., Benson, C., Rodriguez-Caro, L., Ren, A., Papa, R., Martin, A., Hoffmann, F. G., Range, R. C., Counterman, B. A. 2020. Wnt Genes in Wing Pattern Development of Coliadinae Butterflies. Frontiers in Ecology and Evolution 8.

Thrash, A., Hoffmann, F. G., Perkins, A. D. 2020. Toward a more holistic method of genome assembly assessment. BMC bioinformatics 21(Suppl 4):249.

Storz, J. F., Natarajan, C., Grouleff, M. K., Vandewege, M., Hoffmann, F. G., You, X., Venkatesh, B., Fago, A. 2020. Oxygenation properties of hemoglobin and the evolutionary origins of isoform multiplicity in an amphibious air-breathing fish, the blue-spotted mudskipper (Boleophthalmus pectinirostris). The Journal of experimental biology 223.

Vines, P. L., Hoffmann, F. G., Meyer, F. S., Allen, T. W., Luo, J., Zhang, N., Tomaso-Peterson, M. 2020. Magnaporthiopsis cynodontis, a novel turfgrass pathogen with widespread distribution in the United States. Mycologia 112(1):52-63.

Vines, P. L., Tomaso-Peterson, M., Hoffmann, F. G., Meyer, F. S., Allen, T. W., Luo, J., Zhang, N. 2019. Magnaporthiopsis cynodontis, a novel turfgrass pathogen with widespread distribution in the United States. Mycologia 112(1):52-63.

Opazo, J. C., Kuraku, S., Zavala, K., Toloza-Villalobos, J., Hoffmann, F. G. 2019. Evolution of nodal and nodal-related genes and the putative composition of the heterodimers that trigger the nodal pathway in vertebrates. Evolution and Development 21(4):205-217.

Perry, B. W., Card, D. C., McGlothlin, J. W., Pasquesi GIM, ., Adams, R. H., Schield, D. R., Hales, N. R., Corbin, A. B., Demuth, J. P., Hoffmann, F. G., Vandewege, M. W., Schott, R. K., Bhattacharyya, N., Chang BSW, ., Casewell, N. R., Whiteley, G., Reyes-Velasco, J., Mackessy, S. P., Gamble, T., Storey, K. B., Biggar, K. K., Passow, C. N., Kuo, C. H., McGaugh, S. E., Bronikowski, A. M., de Koning APJ, ., Edwards, S. V., Pfrender, M. E., Minx, P., Brodie, 3rd, E. D., Brodie, Jr, E. D., Warren, W. C., Castoe, T. A. 2018. Molecular Adaptations for Sensing and Securing Prey and Insight into Amniote Genome Diversity from the Garter Snake Genome. Genome biology and evolution 10(8):2110-2129.

Zhu, X., Guan, Y., Signore, A. V., Natarajan, C., DuBay, S. G., Cheng, Y., Han, N., Song, G., Qu, Y., Moriyama, H., Hoffmann, F. G., Fago, A., Lei, F., Storz, J. F. 2018. Divergent and parallel routes of biochemical adaptation in high-altitude passerine birds from the Qinghai-Tibet Plateau. Proceedings of the National Academy of Sciences of the United States of America 115(8):1865-1870.

Hoffmann, F. G., Vandewege, M. W., Storz, J. F., Opazo, J. C. 2018. Gene turnover and diversification of the α- and β-globin gene families in sauropsid vertebrates. Genome biology and evolution

Malone, L., Opazo, J. C., Ryan, P. L., Hoffmann, F. G. 2017. Progressive erosion of the Relaxin1 gene in bovids. General and comparative endocrinology 252:12-17.

Tomasco, I. H., Boullosa, N., Hoffmann, F. G., Lessa, E. P. 2017. Nucleotide sequence and results of test of adaptive evolution in the α-globin gene of octodontoid rodents. Data in brief 15:517-521.

Tomasco, I. H., Boullosa, N., Hoffmann, F. G., Lessa, E. P. 2017. Molecular adaptive convergence in the α-globin gene in subterranean octodontid rodents. Gene 628:275-280.

Zavala, K., Vandewege, M. W., Hoffmann, F. G., Opazo, J. C. 2017. Evolution of the β-adrenoreceptors in vertebrates. General and comparative endocrinology 240:129-137.

Natarajan, C., Hoffmann, F. G., Weber, R. E., Fago, A., Witt, C. C., Storz, J. F. 2016. Predictable convergence in hemoglobin function has unpredictable molecular underpinnings. Science (New York, N.Y.) 354(6310):336-339.

Wichmann, I. A., Zavala, K., Hoffmann, F. G., Vandewege, M. W., Corvalán, A. H., Amigo, J. D., Owen, G. I., Opazo, J. C. 2016. Evolutionary history of the reprimo tumor suppressor gene family in vertebrates with a description of a new reprimo gene lineage. Gene 591(1):245-54.

Tomaso-Peterson, M., Jo, Y., Vines, P., Hoffmann, F. G. 2016. Curvularia malinah sp.nov. incites a new disease of warm-season turfgrasses in the southeastern United States. Mycologia 108(5):915-924.

Vandewege, M. W., Platt, 2nd, R. N., Ray, D. A., Hoffmann, F. G. 2016. Transposable Element Targeting by piRNAs in Laurasiatherians with Distinct Transposable Element Histories. Genome biology and evolution 8(5):1327-37.

Eyun, S. I., Moriyama, H., Hoffmann, F. G., Moriyama, E. N. 2016. Molecular Evolution and Functional Divergence of Trace Amine-Associated Receptors. PloS one 11(3):e0151023.

Vandewege, M. W., Mangum, S. F., Gabaldón, T., Castoe, T. A., Ray, D. A., Hoffmann, F. G. 2016. Contrasting Patterns of Evolutionary Diversification in the Olfactory Repertoires of Reptile and Bird Genomes. Genome biology and evolution 8(3):470-80.

Kook, I., Henley, C., Meyer, F. S., Hoffmann, F. G., Jones, C. 2015. Bovine herpesvirus 1 productive infection and immediate early transcription unit 1 promoter are stimulated by the synthetic corticosteroid dexamethasone. Virology 484:377-85.

Storz, J. F., Natarajan, C., Moriyama, H., Hoffmann, F. G., Wang, T., Fago, A., Malte, H., Overgaard, J., Weber, R. E. 2015. Oxygenation Properties and Isoform Diversity of Snake Hemoglobins. American journal of physiology. Regulatory, integrative and comparative physiology

Janecka, J. E., Nielsen, S. S., Andersen, S. D., Hoffmann, F. G., Weber, R. E., Anderson, T., Storz, J. F., Fago, A. 2015. Genetically based low oxygen affinities of felid hemoglobins: lack of biochemical adaptation to high-altitude hypoxia in the snow leopard. The Journal of experimental biology 218(Pt 15):2402-9.

Hoffmann, F. G., McGuire, L. P., Counterman, B. A., Ray, D. A. 2015. Transposable elements and small RNAs: Genomic fuel for species diversity. Mobile genetic elements 5(5):63-66.

Opazo, J. C., Lee, A. P., Hoffmann, F. G., Toloza-Villalobos, J., Burmester, T., Venkatesh, B., Storz, J. F. 2015. Ancient Duplications and Expression Divergence in the Globin Gene Superfamily of Vertebrates: Insights from the Elephant Shark Genome and Transcriptome. Molecular biology and evolution 32(7):1684-94.

Opazo, J. C., Hoffmann, F. G., Natarajan, C., Witt, C. C., Berenbrink, M., Storz, J. F. 2015. Gene turnover in the avian globin gene families and evolutionary changes in hemoglobin isoform expression. Molecular biology and evolution 32(4):871-87.

Natarajan, C., Hoffmann, F. G., Lanier, H. C., Wolf, C. J., Cheviron, Z. A., Spangler, M. L., Weber, R. E., Fago, A., Storz, J. F. 2015. Intraspecific polymorphism, interspecific divergence, and the origins of function-altering mutations in deer mouse hemoglobin. Molecular biology and evolution 32(4):978-97.

Tufts, D. M., Natarajan, C., Revsbech, I. G., Projecto-Garcia, J., Hoffmann, F. G., Weber, R. E., Fago, A., Moriyama, H., Storz, J. F. 2015. Epistasis constrains mutational pathways of hemoglobin adaptation in high-altitude pikas. Molecular biology and evolution 32(2):287-98.

Zhang, G., Li , C., Li , Q., Li , B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W., Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li , H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., da Fonseca, R. R., Alfaro-Núñez, A., Schubert, M., Orlando, L., Mourier, T., Howard, J. T., Ganapathy, G. 2014. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.) 346(6215):1311-20.

Green, R. E., Braun, E. L., Armstrong, J., Earl, D., Nguyen, N., Hickey, G., Vandewege, M. W., St John, J. A., Capella-Gutiérrez, S., Castoe, T. A., Kern, C., Fujita, M. K., Opazo, J. C., Jurka, J., Kojima, K. K., Caballero, J., Hubley, R. M., Smit, A. F., Platt, R. N., Lavoie, C. A., Ramakodi, M. P., Finger, Jr, J. W., Suh, A., Isberg, S. R., Miles, L., Chong, A. Y., Jaratlerdsiri, W., Gongora, J., Moran, C., Iriarte, A., McCormack, J., Burgess, S. C., Edwards, S. V., Lyons, E., Williams, C., Breen, M., Howard, J. T., Gresham, C. R., Peterson, D. G., Schmitz, J., Pollock, D. D., Haussler, D., Triplett, E. W., Zhang, G., Irie, N., Jarvis, E. D., Brochu, C. A., Schmidt, C. J., McCarthy, F. M., Faircloth, B. C. 2014. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.) 346(6215):1254449.

Suh, A., Churakov, G., Ramakodi, M. P., Platt, 2nd, R. N., Jurka, J., Kojima, K. K., Caballero, J., Smit, A. F., Vliet, K. A., Hoffmann, F. G., Brosius, J., Green, R. E., Braun, E. L., Ray, D. A., Schmitz, J. 2014. Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes. Genome biology and evolution 7(1):205-17.

Schwarze, K., Campbell, K. L., Hankeln, T., Storz, J. F., Hoffmann, F. G., Burmester, T. 2014. The globin gene repertoire of lampreys: convergent evolution of hemoglobin and myoglobin in jawed and jawless vertebrates. Molecular biology and evolution 31(10):2708-21.

Platt, 2nd, R. N., Vandewege, M. W., Kern, C., Schmidt, C. J., Hoffmann, F. G., Ray, D. A. 2014. Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats. Molecular biology and evolution 31(6):1536-45.

Gaudry, M. J., Storz, J. F., Butts, G. T., Campbell, K. L., Hoffmann, F. G. 2014. Repeated evolution of chimeric fusion genes in the β-globin gene family of laurasiatherian mammals. Genome biology and evolution 6(5):1219-34.

Arroyo, J. I., Hoffmann, F. G., Opazo, J. C. 2014. Evolution of the relaxin/insulin-like gene family in anthropoid primates. Genome biology and evolution 6(3):491-9.

Castoe, T. A., de Koning, A. P., Hall, K. T., Card, D. C., Schield, D. R., Fujita, M. K., Ruggiero, R. P., Degner, J. F., Daza, J. M., Gu, W., Reyes-Velasco, J., Shaney, K. J., Castoe, J. M., Fox, S. E., Poole, A. W., Polanco, D., Dobry, J., Vandewege, M. W., Li , Q., Schott, R. K., Kapusta, A., Minx, P., Feschotte, C., Uetz, P., Ray, D. A., Hoffmann, F. G., Bogden, R., Smith, E. N., Chang, B. S., Vonk, F. J., Casewell, N. R., Henkel, C. V., Richardson, M. K., Mackessy, S. P., Bronikowski, A. M., Yandell, M., Warren, W. C., Secor, S. M., Pollock, D. D. 2013. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America 110(51):20645-50.

Damsgaard, C., Storz, J. F., Hoffmann, F. G., Fago, A. 2013. Hemoglobin isoform differentiation and allosteric regulation of oxygen binding in the turtle, Trachemys scripta. American journal of physiology. Regulatory, integrative and comparative physiology 305(8):R961-7.

Vandewege, M. W., Phillips, C. J., Wickliffe, J. K., Hoffmann, F. G. 2013. Evolution of the ABPA subunit of androgen-binding protein expressed in the submaxillary glands in New and Old World rodent taxa. Journal of molecular evolution 76(5):324-31.

Storz, J. F., Opazo, J. C., Hoffmann, F. G. 2013. Gene duplication, genome duplication, and the functional diversification of vertebrate globins. Molecular phylogenetics and evolution 66(2):469-78.

Opazo, J. C., Butts, G. T., Nery, M. F., Storz, J. F., Hoffmann, F. G. 2013. Whole-genome duplication and the functional diversification of teleost fish hemoglobins. Molecular biology and evolution 30(1):140-53.

Nery, M. F., González, D. J., Hoffmann, F. G., Opazo, J. C. 2012. Resolution of the laurasiatherian phylogeny: evidence from genomic data. Molecular phylogenetics and evolution 64(3):685-9.

Arroyo, J. I., Hoffmann, F. G., Good, S., Opazo, J. C. 2012. INSL4 pseudogenes help define the relaxin family repertoire in the common ancestor of placental mammals. Journal of molecular evolution 75(1-2):73-8.

Hoffmann, F. G., Opazo, J. C., Hoogewijs, D., Hankeln, T., Ebner, B., Vinogradov, S. N., Bailly, X., Storz, J. F. 2012. Evolution of the globin gene family in deuterostomes: lineage-specific patterns of diversification and attrition. Molecular biology and evolution 29(7):1735-45.

Arroyo, J. I., Hoffmann, F. G., Opazo, J. C. 2012. Gene turnover and differential retention in the relaxin/insulin-like gene family in primates. Molecular phylogenetics and evolution 63(3):768-76.

Hoogewijs, D., Ebner, B., Germani, F., Hoffmann, F. G., Fabrizius, A., Moens, L., Burmester, T., Dewilde, S., Storz, J. F., Vinogradov, S. N., Hankeln, T. 2012. Androglobin: a chimeric globin in metazoans that is preferentially expressed in Mammalian testes. Molecular biology and evolution 29(4):1105-14.

Arroyo, J. I., Hoffmann, F. G., Opazo, J. C. 2012. Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit. Journal of molecular evolution 74(1-2):52-60.

Storz, J. F., Natarajan, C., Cheviron, Z. A., Hoffmann, F. G., Kelly, J. K. 2012. Altitudinal variation at duplicated β-globin genes in deer mice: effects of selection, recombination, and gene conversion. Genetics 190(1):203-16.

Hoffmann, F. G., Opazo, J. C., Storz, J. F. 2012. Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates. Molecular biology and evolution 29(1):303-12.

Storz, J. F., Opazo, J. C., Hoffmann, F. G. 2011. Phylogenetic diversification of the globin gene superfamily in chordates. IUBMB life 63(5):313-22.

Storz, J. F., Hoffmann, F. G., Opazo, J. C., Sanger, T. J., Moriyama, H. 2011. Developmental regulation of hemoglobin synthesis in the green anole lizard Anolis carolinensis. The Journal of experimental biology 214(Pt 4):575-81.

Serpeloni, M., Vidal, N. M., Goldenberg, S., Avila, A. R., Hoffmann, F. G. 2011. Comparative genomics of proteins involved in RNA nucleocytoplasmic export. BMC evolutionary biology 11:7.

Hoffmann, F. G., Opazo, J. C., Storz, J. F. 2011. Differential loss and retention of cytoglobin, myoglobin, and globin-E during the radiation of vertebrates. Genome biology and evolution 3:588-600.

Hoffmann, F. G., Opazo, J. C. 2011. Evolution of the relaxin/insulin-like gene family in placental mammals: implications for its early evolution. Journal of molecular evolution 72(1):72-9.

Hoffmann, F. G., Opazo, J. C., Storz, J. F. 2010. Gene cooption and convergent evolution of oxygen transport hemoglobins in jawed and jawless vertebrates. Proceedings of the National Academy of Sciences of the United States of America 107(32):14274-9.

Hoffmann, F. G., Storz, J. F., Gorr, T. A., Opazo, J. C. 2010. Lineage-specific patterns of functional diversification in the alpha- and beta-globin gene families of tetrapod vertebrates. Molecular biology and evolution 27(5):1126-38.

Zhang, H., Tully, D. C., Hoffmann, F. G., He, J., Kankasa, C., Wood, C. 2010. Restricted genetic diversity of HIV-1 subtype C envelope glycoprotein from perinatally infected Zambian infants. PloS one 5(2):e9294.

Tso, F. Y., Hoffmann, F. G., Tully, D. C., Lemey, P., Rasmussen, R. A., Zhang, H., Ruprecht, R. M., Wood, C. 2009. A comparative study of HIV-1 clade C env evolution in a Zambian infant with an infected rhesus macaque during disease progression. AIDS (London, England) 23(14):1817-28.

Raboni, S. M., Hoffmann, F. G., Oliveira, R. C., Teixeira, B. R., Bonvicino, C. R., Stella, V., Carstensen, S., Bordignon, J., D'Andrea, P. S., Lemos, E. R., Dos Duarte Santos, C. N. 2009. Phylogenetic characterization of hantaviruses from wild rodents and hantavirus pulmonary syndrome cases in the state of Parana (southern Brazil). The Journal of general virology 90(Pt 9):2166-71.

Raboni, S. M., de Borba, L., Hoffmann, F. G., de Noronha, L., Azevedo, M. L., Carstensen, S., Mazzarotto, G. A., Bordignon, J., dos Santos, C. N. 2009. Evidence of circulation of Laguna Negra-like hantavirus in the Central West of Brazil: case report. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 45(2):153-6.

Hoffmann, F. G., Opazo, J. C., Storz, J. F. 2008. New genes originated via multiple recombinational pathways in the beta-globin gene family of rodents. Molecular biology and evolution 25(12):2589-600.

Hoffmann, F. G., Hoofer, S. R., Baker, R. J. 2008. Molecular dating of the diversification of Phyllostominae bats based on nuclear and mitochondrial DNA sequences. Molecular phylogenetics and evolution 49(2):653-8.

Opazo, J. C., Hoffmann, F. G., Storz, J. F. 2008. Differential loss of embryonic globin genes during the radiation of placental mammals. Proceedings of the National Academy of Sciences of the United States of America 105(35):12950-5.

Nogueira, M. B., Stella, V., Bordignon, J., Batista, W. C., Borba Ld, ., Silva, L. H., Hoffmann, F. G., Probst, C. M., Santos, C. N. 2008. Evidence for the co-circulation of dengue virus type 3 genotypes III and V in the Northern region of Brazil during the 2002-2004 epidemics. Memorias do Instituto Oswaldo Cruz 103(5):483-8.

Hoffmann, F. G., He, X., West, J. T., Lemey, P., Kankasa, C., Wood, C. 2008. Genetic variation in mother-child acute seroconverter pairs from Zambia. AIDS (London, England) 22(7):817-24.

Storz, J. F., Hoffmann, F. G., Opazo, J. C., Moriyama, H. 2008. Adaptive functional divergence among triplicated alpha-globin genes in rodents. Genetics 178(3):1623-38.

Hoffmann, F. G., Opazo, J. C., Storz, J. F. 2008. Rapid rates of lineage-specific gene duplication and deletion in the alpha-globin gene family. Molecular biology and evolution 25(3):591-602.

Opazo, J. C., Hoffmann, F. G., Storz, J. F. 2008. Genomic evidence for independent origins of beta-like globin genes in monotremes and therian mammals. Proceedings of the National Academy of Sciences of the United States of America 105(5):1590-5.

Crone, E. J., Zera, A. J., Anand, A., Oakeshott, J. G., Sutherland, T. D., Russell, R. J., Harshman, L. G., Hoffmann, F. G., Claudianos, C. 2007. Jhe in Gryllus assimilis: cloning, sequence-activity associations and phylogeny. Insect biochemistry and molecular biology 37(12):1359-65.

Storz, J. F., Baze, M., Waite, J. L., Hoffmann, F. G., Opazo, J. C., Hayes, J. P. 2007. Complex signatures of selection and gene conversion in the duplicated globin genes of house mice. Genetics 177(1):481-500.

Hoffmann, F. G., Storz, J. F. 2007. The alphaD-globin gene originated via duplication of an embryonic alpha-like globin gene in the ancestor of tetrapod vertebrates. Molecular biology and evolution 24(9):1982-90.

Storz, J. F., Sabatino, S. J., Hoffmann, F. G., Gering, E. J., Moriyama, H., Ferrand, N., Monteiro, B., Nachman, M. W. 2007. The molecular basis of high-altitude adaptation in deer mice. PLoS genetics 3(3):e45.

Hoffmann, F. G., Baker, R. J. 2003. Comparative phylogeography of short-tailed bats (Carollia: Phyllostomidae). Molecular ecology 12(12):3403-14.

Hoffmann, F. G., Owen, J. G., Baker, R. J. 2003. mtDNA perspective of chromosomal diversification and hybridization in Peters' tent-making bat (Uroderma bilobatum: Phyllostomidae). Molecular ecology 12(11):2981-93.